5DBM
Crystal structure of the CBP bromodomain in complex with CPI703
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9786 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 110.588, 34.034, 117.727 |
Unit cell angles | 90.00, 103.93, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.860 |
R-factor | 0.1746 |
Rwork | 0.172 |
R-free | 0.22020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dwy |
RMSD bond length | 0.021 |
RMSD bond angle | 1.987 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.920 |
High resolution limit [Å] | 1.850 | 3.990 | 1.850 |
Rmerge | 0.094 | 0.038 | 0.680 |
Rmeas | 0.111 | 0.045 | 0.803 |
Rpim | 0.058 | 0.024 | 0.422 |
Total number of observations | 132348 | ||
Number of reflections | 36503 | ||
<I/σ(I)> | 7.2 | ||
Completeness [%] | 99.7 | 99.8 | 99 |
Redundancy | 3.6 | 3.6 | 3.5 |
CC(1/2) | 0.997 | 0.674 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 277 | 0.1 M BICINE:NaOH pH 9.0, 20% (w/v) PEG 6000 (CPI703) |