Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D9Y

Crystal structure of TET2-5fC complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-12-15
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.979
Spacegroup nameC 2 2 21
Unit cell lengths48.154, 87.958, 268.020
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.767 - 1.971
R-factor0.2074
Rwork0.205
R-free0.24820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4nm6
RMSD bond length0.009
RMSD bond angle1.159
Data reduction softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.040
High resolution limit [Å]1.9704.2401.970
Rmerge0.0550.0360.624
Rmeas0.0600.0390.695
Rpim0.0240.0160.299
Total number of observations242789
Number of reflections57919
<I/σ(I)>7.5
Completeness [%]98.999.893.2
Redundancy66.34.7
CC(1/2)0.9980.817
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.327721% PEGMME2000, 0.1M MES

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon