5D8U
2009 H1N1 PA endonuclease mutant E119D in complex with L-742,001
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-08-24 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.97921 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 89.881, 89.881, 134.148 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.000 - 2.290 |
R-factor | 0.2003 |
Rwork | 0.198 |
R-free | 0.24080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5czn |
RMSD bond length | 0.026 |
RMSD bond angle | 2.371 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0124) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.370 |
High resolution limit [Å] | 2.290 | 4.930 | 2.290 |
Rmerge | 0.062 | 0.031 | 0.819 |
Rmeas | 0.064 | 0.032 | 0.864 |
Rpim | 0.018 | 0.009 | 0.267 |
Total number of observations | 157991 | ||
Number of reflections | 12715 | ||
<I/σ(I)> | 10.8 | ||
Completeness [%] | 99.6 | 100 | 95.9 |
Redundancy | 12.4 | 11.8 | 9.6 |
CC(1/2) | 0.999 | 0.792 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 0.1 M HEPES sodium, pH 7.5, 1.0 M ammonium sulfate, 2% w/v PEG400, 50 mM magnesium chloride, 50 mM manganese chloride |