5C5Y
Crystal structure of deoxyribose-phosphate aldolase from Colwellia psychrerythraea (hexagonal form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.969 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 115.840, 115.840, 400.100 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.770 - 2.100 |
R-factor | 0.1741 |
Rwork | 0.173 |
R-free | 0.19890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5c2x |
RMSD bond length | 0.006 |
RMSD bond angle | 0.903 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.770 | 2.150 | |
High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
Rmerge | 0.087 | 0.031 | 1.142 |
Rmeas | 0.091 | 0.033 | 1.188 |
Total number of observations | 1250142 | ||
Number of reflections | 93159 | 1251 | 6628 |
<I/σ(I)> | 21.4 | 66.86 | 2.62 |
Completeness [%] | 99.6 | 98.3 | 97.8 |
Redundancy | 13.4 | 12.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | PEG 1000, calcium acetate, imidazole, triethanolamine |