5BZE
Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.940, 81.901, 32.209 |
Unit cell angles | 90.00, 117.81, 90.00 |
Refinement procedure
Resolution | 40.950 - 1.310 |
R-factor | 0.17793 |
Rwork | 0.177 |
R-free | 0.19529 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.253 |
Data scaling software | XSCALE |
Phasing software | PHASER (2.1.4) |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.901 | 81.901 | 1.317 |
High resolution limit [Å] | 1.312 | 6.090 | 1.312 |
Rmerge | 0.044 | 0.031 | 0.222 |
Rmeas | 0.053 | 0.037 | 0.265 |
Rpim | 0.029 | 0.020 | 0.144 |
Total number of observations | 109201 | 1147 | 1164 |
Number of reflections | 33652 | ||
<I/σ(I)> | 17.1 | 25.1 | 5.9 |
Completeness [%] | 99.3 | 98.3 | 100 |
Redundancy | 3.2 | 3.3 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | PEG MME 5000, MES, (NH4)2SO4 |