Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ARF

SMYD2 in complex with small molecule inhibitor compound-2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-02-06
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 21 21
Unit cell lengths130.493, 51.759, 69.568
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.590 - 1.920
R-factor0.25958
Rwork0.257
R-free0.30052
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tg5
RMSD bond length0.017
RMSD bond angle1.986
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0032)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.1102.030
High resolution limit [Å]1.9201.920
Rmerge0.0800.700
Number of reflections36156
<I/σ(I)>12.832.3
Completeness [%]97.997.4
Redundancy3.69
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
17SMYD2 CO-CRYSTALLIZED WITH 2 MMOL SAM. RESERVOIR 23% PEG 3350, 100 MMOL HEPES PH 7.0. CO-COMPLEX WITH INHIBITOR FORMED BY SOAKING SMYD2-SAM CRYSTALS WITH 5 MILLIMOLAR COMPOUND-2 FOR 1 HOUR. CRYO WITH ADDITIONAL 20% GLYCEROL AND 1 MMOL COMPOUND-2.

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon