5ARF
SMYD2 in complex with small molecule inhibitor compound-2
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-02-06 |
| Detector | DECTRIS PILATUS 6M |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 130.493, 51.759, 69.568 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 47.590 - 1.920 |
| R-factor | 0.25958 |
| Rwork | 0.257 |
| R-free | 0.30052 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3tg5 |
| RMSD bond length | 0.017 |
| RMSD bond angle | 1.986 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.110 | 2.030 |
| High resolution limit [Å] | 1.920 | 1.920 |
| Rmerge | 0.080 | 0.700 |
| Number of reflections | 36156 | |
| <I/σ(I)> | 12.83 | 2.3 |
| Completeness [%] | 97.9 | 97.4 |
| Redundancy | 3.69 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | 7 | SMYD2 CO-CRYSTALLIZED WITH 2 MMOL SAM. RESERVOIR 23% PEG 3350, 100 MMOL HEPES PH 7.0. CO-COMPLEX WITH INHIBITOR FORMED BY SOAKING SMYD2-SAM CRYSTALS WITH 5 MILLIMOLAR COMPOUND-2 FOR 1 HOUR. CRYO WITH ADDITIONAL 20% GLYCEROL AND 1 MMOL COMPOUND-2. |






