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5A5Z

Approved Drugs Containing Thiols as Inhibitors of Metallo-beta- lactamases: Strategy To Combat Multidrug-Resistant Bacteria

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2014-09-13
DetectorDECTRIS PILATUS
Spacegroup nameP 41 21 2
Unit cell lengths108.047, 108.047, 92.571
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.659 - 2.600
R-factor0.2103
Rwork0.208
R-free0.25180
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3Q6X
RMSD bond length0.004
RMSD bond angle0.739
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.6602.690
High resolution limit [Å]2.6002.600
Rmerge0.2101.250
Number of reflections17411
<I/σ(I)>12.171.89
Completeness [%]100.0100
Redundancy9.29.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298FOR CRYSTALLIZATION, THE PURIFIED PROTEIN WAS CONCENTRATED TO 19.88 MG/ML. APO - NDM - 1 CRYSTALS WERE GROWN AT 25 C FOR 3 WEEKS USING THE HANGING - DROP VAPOUR DIFFUSION METHOD BY MIXING 0.7UL OF PROTEIN SOLUTION WITH 1UL OF RESERVOIR BUFFER (24 % PEG 1500 AND 0.05 M TBG (SODIUM TARTRATE/BIS - TRIS/GLYCYLGLYCINE) PH 4) AND 0.3UL OF 1/10 DILUTION OF NDM - 1 CRYSTAL SEEDS STOCK.

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PDB entries from 2024-05-15

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