4ZT5
Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (2S)-N-(3,5-dichlorobenzyl)-N'-(1H-imidazo[4,5-b]pyridin-2-yl)-2-methylpropane-1,3-diamine (Chem 1655)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL9-2 |
| Synchrotron site | SSRL |
| Beamline | BL9-2 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2014-01-23 |
| Detector | MARMOSAIC 325 mm CCD |
| Wavelength(s) | 0.979 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 86.794, 106.021, 207.659 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 38.670 - 2.350 |
| R-factor | 0.2016 |
| Rwork | 0.200 |
| R-free | 0.22850 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4eg8 |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.091 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.2.14) |
| Phasing software | PHASER (2.5.5) |
| Refinement software | REFMAC (refmac_5.8.0073) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 39.430 | 39.430 | 2.400 |
| High resolution limit [Å] | 2.350 | 11.980 | 2.350 |
| Rmerge | 0.174 | 0.026 | 1.880 |
| Rpim | 0.046 | 0.007 | 0.496 |
| Total number of observations | 1208827 | 8805 | 68815 |
| Number of reflections | 80610 | ||
| <I/σ(I)> | 17.5 | 70.4 | 1.8 |
| Completeness [%] | 100.0 | 97.4 | 100 |
| Redundancy | 15 | 12.7 | 15.1 |
| CC(1/2) | 0.999 | 1.000 | 0.689 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 298 | 2.0-2.3 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M sodium cacodylate |






