4ZGH
Structure of Sugar Binding Protein Pneumolysin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-08 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.953 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 24.857, 133.619, 220.442 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.513 - 2.900 |
R-factor | 0.2045 |
Rwork | 0.199 |
R-free | 0.30690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1hvn |
RMSD bond length | 0.022 |
RMSD bond angle | 1.955 |
Data scaling software | Aimless (0.5.4) |
Phasing software | PHASER (2.5.1) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.540 | 44.540 | 3.070 |
High resolution limit [Å] | 2.900 | 8.690 | 2.900 |
Rmerge | 0.157 | 0.045 | 0.693 |
Rpim | 0.069 | 0.021 | 0.302 |
Total number of observations | 105956 | 3924 | 16590 |
Number of reflections | 17539 | ||
<I/σ(I)> | 12.2 | 32.9 | 3.2 |
Completeness [%] | 99.4 | 99.1 | 96.6 |
Redundancy | 6 | 5.1 | 6.1 |
CC(1/2) | 0.995 | 0.999 | 0.897 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 294 | 10% PEG 8000, 10% glycerol, 10% ethylene glycol, 100 mM HEPES buffer, 5 mM potassium gold cyanide |