4Z6A
Crystal Structure of a FVIIa-Trypsin Chimera (YT) in Complex with Soluble Tissue Factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-25 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.030, 81.700, 124.560 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.513 - 2.250 |
R-factor | 0.1907 |
Rwork | 0.188 |
R-free | 0.24050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | In-House FVIIa-WT:sTF-FFR similar to 1DAN |
RMSD bond length | 0.008 |
RMSD bond angle | 0.900 |
Data reduction software | XDS (March 30, 2013) |
Data scaling software | XSCALE (July 4, 2012 BUILT=20130706) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.515 | 2.330 | |
High resolution limit [Å] | 2.250 | 10.060 | 2.250 |
Rmerge | 0.143 | 0.021 | 1.433 |
Rmeas | 0.158 | 0.026 | 1.694 |
Total number of observations | 155085 | ||
Number of reflections | 32041 | 658 | 3467 |
<I/σ(I)> | 7.33 | 30.18 | 0.64 |
Completeness [%] | 97.0 | 93.2 | 81 |
Redundancy | 4.8 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 295 | 0.1M NaCitrate, 16.6% PEG 3350, 12.5% 1-Propanol, with seeding |