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4Z0L

The murine cyclooxygenase-2 complexed with a nido-dicarbaborate-containing indomethacin derivative

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2014-02-05
DetectorPSI PILATUS 6M
Wavelength(s)0.97918
Spacegroup nameP 21 21 2
Unit cell lengths180.944, 135.011, 124.195
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.600 - 2.290
R-factor0.212
Rwork0.210
R-free0.25000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nt1
RMSD bond length0.008
RMSD bond angle0.946
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.370
High resolution limit [Å]2.2902.290
Rmerge0.0610.195
Number of reflections135815
<I/σ(I)>17.75.7
Completeness [%]98.791
Redundancy4.34.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8291mCOX-2 protein reconstituted with a 2-fold molar excess of heme in phosphtate buffer, pH 6.7, 100 mM NaCl, 1.2% (w/v) -OG, and 0.1% NaN3, and 10-fold molar excess of inhibitors from 25 mM DMSO stocks were added to protein samples. Mixing 3 uL of the protein-inhibitor complex with 3 uL crystallization solution containing 50 mM EPPS, pH 8.0, 120 mM MgCl2, 22-26% PEG MME-550 against reservoir solutions comprised of 50 mM EPPS pH 8.0, 120 mM MgCl2, 22-26% PEG MME-550

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