4YW1
Crystal Structure of Streptococcus pneumoniae NanC, complex with Neu5Ac and Neu5Ac2en following soaking with 3'SL
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-27 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 100.834, 74.945, 113.302 |
Unit cell angles | 90.00, 96.35, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.250 |
R-factor | 0.2107 |
Rwork | 0.209 |
R-free | 0.24880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vw2 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.396 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.2) |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 2.290 |
High resolution limit [Å] | 2.250 | 6.100 | 2.250 |
Rmerge | 0.121 | 0.051 | 0.482 |
Total number of observations | 197232 | ||
Number of reflections | 75606 | ||
<I/σ(I)> | 8.3 | ||
Completeness [%] | 94.5 | 85.8 | 97.8 |
Redundancy | 2.6 | 2.8 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 16% PEG8000, 20% glycerol, 40mM monopotassium phosphate |