4YRS
Crystal structure of T. cruzi Histidyl-tRNA synthetase in complex with N-(quinolin-3-yl)propanamide (Chem 1698)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-06-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.95 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 66.455, 119.677, 66.750 |
Unit cell angles | 90.00, 94.17, 90.00 |
Refinement procedure
Resolution | 37.810 - 2.750 |
R-factor | 0.1834 |
Rwork | 0.181 |
R-free | 0.23710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lc0 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.112 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.6) |
Phasing software | REFMAC |
Refinement software | REFMAC (refmac_5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.810 | 37.810 | 2.900 |
High resolution limit [Å] | 2.750 | 8.700 | 2.750 |
Rmerge | 0.054 | 0.017 | 0.729 |
Rpim | 0.030 | 0.010 | 0.402 |
Total number of observations | 53548 | 1564 | 8173 |
Number of reflections | 13023 | ||
<I/σ(I)> | 17 | 57.4 | 2 |
Completeness [%] | 96.2 | 90.5 | 97.6 |
Redundancy | 4.1 | 3.9 | 4.2 |
CC(1/2) | 0.999 | 0.999 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2 M ammonium sulfate, 23 % to 28 % PEG 3350, 0.1 M sodium citrate pH 4.8 to 5.3, 1 mM TCEP |