4YRQ
Crystal structure of T. cruzi Histidyl-tRNA synthetase in complex with 6-amino-2H-chromen-2-one (Chem 744)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-05-20 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 65.097, 119.271, 66.140 |
Unit cell angles | 90.00, 92.85, 90.00 |
Refinement procedure
Resolution | 27.820 - 2.050 |
R-factor | 0.186 |
Rwork | 0.184 |
R-free | 0.21760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lc0 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.086 |
Data reduction software | DENZO |
Data scaling software | Aimless (0.1.27) |
Phasing software | REFMAC |
Refinement software | REFMAC (refmac_5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 27.820 | 27.820 | 2.110 |
High resolution limit [Å] | 2.050 | 8.940 | 2.050 |
Rmerge | 0.055 | 0.019 | 0.336 |
Rpim | 0.037 | 0.013 | 0.270 |
Total number of observations | 87563 | 1069 | 4470 |
Number of reflections | 31011 | ||
<I/σ(I)> | 10.6 | 30.7 | 2.4 |
Completeness [%] | 98.2 | 88.7 | 89.6 |
Redundancy | 2.8 | 3 | 2 |
CC(1/2) | 0.998 | 0.999 | 0.799 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2 M ammonium sulfate, 23 % to 28 % PEG 3350, 0.1 M sodium citrate pH 4.8 to 5.3, 1 mM TCEP |