4YRN
Crystal structure of T. cruzi Histidyl-tRNA synthetase in complex with 6-bromopyridin-3-amine (Chem 475)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-01-09 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 90.245, 119.221, 94.232 |
Unit cell angles | 90.00, 91.28, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.200 |
R-factor | 0.2068 |
Rwork | 0.205 |
R-free | 0.24010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lc0 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.124 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.27) |
Phasing software | REFMAC |
Refinement software | REFMAC (refmac_5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.370 | 36.370 | 2.270 |
High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
Rmerge | 0.104 | 0.019 | 0.579 |
Rpim | 0.072 | 0.013 | 0.427 |
Total number of observations | 143911 | 2000 | 9895 |
Number of reflections | 49893 | ||
<I/σ(I)> | 9.3 | 37.3 | 1.7 |
Completeness [%] | 98.8 | 94.3 | 94.8 |
Redundancy | 2.9 | 2.8 | 2.4 |
CC(1/2) | 0.996 | 0.999 | 0.672 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2 M ammonium sulfate, 23 % to 28 % PEG 3350, 0.1 M sodium citrate pH 4.8 to 5.3, 1 mM TCEP |