Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YRF

Crystal structure of T. cruzi Histidyl-tRNA synthetase in complex with 5-bromopyridin-2(1H)-one (Chem 148)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]100
Detector technologyCCD
Collection date2013-02-28
DetectorRIGAKU SATURN 944
Wavelength(s)1.54
Spacegroup nameI 1 2 1
Unit cell lengths64.433, 118.814, 65.975
Unit cell angles90.00, 92.39, 90.00
Refinement procedure
Resolution28.950 - 2.200
R-factor0.2138
Rwork0.211
R-free0.26110
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3lc0
RMSD bond length0.006
RMSD bond angle1.058
Data reduction softwareXDS
Data scaling softwareAimless (0.3.6)
Phasing softwareREFMAC
Refinement softwareREFMAC (refmac_5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]28.95028.9502.270
High resolution limit [Å]2.2009.0702.200
Rmerge0.0440.0120.374
Rpim0.0310.0090.282
Total number of observations663378534517
Number of reflections24799
<I/σ(I)>1881.12.2
Completeness [%]98.685.896.3
Redundancy2.72.72.2
CC(1/2)0.9991.0000.864
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2980.2 M ammonium sulfate, 23 % to 28 % PEG 3350, 0.1 M sodium citrate pH 4.8 to 5.3, 1 mM TCEP

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon