4YMK
Crystal Structure of Stearoyl-Coenzyme A Desaturase 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2013-11-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 77.061, 113.766, 141.698 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.411 - 2.605 |
R-factor | 0.2044 |
Rwork | 0.203 |
R-free | 0.23530 |
Structure solution method | SAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.633 |
Data scaling software | XDS |
Phasing software | SHELXDE |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.111 | 0.040 | 0.530 |
Rmeas | 0.121 | 0.045 | 0.588 |
Rpim | 0.047 | 0.018 | 0.248 |
Total number of observations | 237283 | 32391 | |
Number of reflections | 38065 | ||
<I/σ(I)> | 6.9 | 1.3 | |
Completeness [%] | 98.0 | 96.5 | 94 |
Redundancy | 6.2 | 6.2 | 5 |
CC(1/2) | 0.992 | 0.999 | 0.827 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 6.9 | 298 | 35% PEG400, 200 mM sodium chloride, 4% ethylene glycol, 100 mM MES, pH 6.9 |
2 | LIPIDIC CUBIC PHASE | 6.9 | 298 | 35% PEG400, 200 mM sodium chloride, 4% ethylene glycol, 100 mM MES, pH 6.9 |