4Y1S
Structural basis for Ca2+-mediated interaction of the perforin C2 domain with lipid membranes
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-18 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.953697 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.700, 43.211, 68.077 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.482 - 1.611 |
R-factor | 0.1671 |
Rwork | 0.166 |
R-free | 0.18520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nsj |
RMSD bond length | 0.011 |
RMSD bond angle | 1.286 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.482 | 1.669 |
High resolution limit [Å] | 1.611 | 1.611 |
Rmerge | 0.216 | 0.547 |
Number of reflections | 14926 | |
<I/σ(I)> | 30.06 | 4.83 |
Completeness [%] | 99.9 | 98.9 |
Redundancy | 7.1 | 6.8 |
CC(1/2) | 0.979 | 0.860 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 0.1M MES pH 6.0, 0.2 M NaCl and 20% (w/v) polyethylene glycol 2000 monomethyl ether |