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4Y1S

Structural basis for Ca2+-mediated interaction of the perforin C2 domain with lipid membranes

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyCCD
Collection date2014-12-18
DetectorADSC QUANTUM 315r
Wavelength(s)0.953697
Spacegroup nameP 21 21 21
Unit cell lengths37.700, 43.211, 68.077
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.482 - 1.611
R-factor0.1671
Rwork0.166
R-free0.18520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nsj
RMSD bond length0.011
RMSD bond angle1.286
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.9_1692))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.4821.669
High resolution limit [Å]1.6111.611
Rmerge0.2160.547
Number of reflections14926
<I/σ(I)>30.064.83
Completeness [%]99.998.9
Redundancy7.16.8
CC(1/2)0.9790.860
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62930.1M MES pH 6.0, 0.2 M NaCl and 20% (w/v) polyethylene glycol 2000 monomethyl ether

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