4XMK
Crystal structure of Fab of HIV-1 gp120 V3-specific human monoclonal antibody 2424 in complex with JR-FL V3 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-11-28 |
Detector | MAR scanner 300 mm plate |
Wavelength(s) | 1.033 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 94.952, 122.254, 140.811 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.282 - 3.179 |
R-factor | 0.2277 |
Rwork | 0.225 |
R-free | 0.28320 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.183 |
Data scaling software | XDS |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.370 |
High resolution limit [Å] | 3.179 | 3.180 |
Number of reflections | 53260 | |
<I/σ(I)> | 11.6 | |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 14.7 | 14.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 296 | PEG 4000, Li2SO4, Tris, glycerol |