4XFM
Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium atrosepticum (ECA3761), Target EFI-511609, with bound D-threonate, domain swapped dimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-07-10 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 153.696, 47.611, 64.142 |
Unit cell angles | 90.00, 107.12, 90.00 |
Refinement procedure
Resolution | 27.919 - 1.550 |
R-factor | 0.1658 |
Rwork | 0.165 |
R-free | 0.19090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xgj |
RMSD bond length | 0.010 |
RMSD bond angle | 1.269 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 61.300 | 61.300 | 1.580 |
High resolution limit [Å] | 1.550 | 8.490 | 1.550 |
Rmerge | 0.049 | 0.034 | 0.659 |
Rpim | 0.030 | 0.024 | 0.398 |
Total number of observations | 234457 | 737 | 11664 |
Number of reflections | 63987 | ||
<I/σ(I)> | 14 | 29.4 | 2.2 |
Completeness [%] | 99.0 | 60.9 | 99.1 |
Redundancy | 3.7 | 2.8 | 3.7 |
CC(1/2) | 0.998 | 0.984 | 0.716 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | Protein (67.0 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM D-Threonate); Reservoir (MCSG1(F1); 0.1 M Bis-Tris pH 6.5, 20%(w/v) PEG MME 5000); Cryoprotection (80% Reservoir, 20% ethylene glycol) |