4X94
Crystal structure of Lysosomal Phospholipase A2 crystallized in the presence of methyl arachidonyl fluorophosphonate (hexagonal form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-06-14 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97937 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 95.978, 95.978, 207.943 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.000 - 2.700 |
R-factor | 0.1793 |
Rwork | 0.177 |
R-free | 0.22110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4x90 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.408 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.740 |
High resolution limit [Å] | 2.700 | 7.160 | 2.700 |
Rmerge | 0.134 | 0.048 | 0.750 |
Rmeas | 0.139 | 0.051 | 0.780 |
Rpim | 0.036 | 0.015 | 0.203 |
Total number of observations | 205101 | ||
Number of reflections | 16438 | ||
<I/σ(I)> | 7.8 | ||
Completeness [%] | 94.7 | 99.9 | 92.4 |
Redundancy | 12.5 | 11.1 | 11.6 |
CC(1/2) | 0.998 | 0.905 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 3 | 277 | 100 mM citric acid pH 3, 0.8 M ammonium sulfate ; crystallized in the presence of methyl arachidonyl fluorophosphonate |