4X46
X-RAY structure thymidine phosphorylase from Salmonella typhimurium complex with SO4 at 2.19 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-09-21 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.918 |
Spacegroup name | I 4 |
Unit cell lengths | 189.927, 189.927, 57.958 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.870 - 2.200 |
R-factor | 0.1842 |
Rwork | 0.183 |
R-free | 0.22370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4eaf |
RMSD bond length | 0.008 |
RMSD bond angle | 1.234 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.870 | 2.330 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.064 | |
Number of reflections | 47158 | |
<I/σ(I)> | 14.3 | 2.11 |
Completeness [%] | 89.0 | 91.1 |
Redundancy | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | 0.1 M Bicine, 1.6 Ammonium sulfate |