4X3Z
Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae, deletion mutant, in complex with XMP and NAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-11 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 91.262, 91.262, 171.214 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.200 - 1.620 |
R-factor | 0.15345 |
Rwork | 0.152 |
R-free | 0.18157 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4qne |
RMSD bond length | 0.015 |
RMSD bond angle | 1.919 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.650 |
High resolution limit [Å] | 1.620 | 4.400 | 1.620 |
Rmerge | 0.067 | 0.035 | 0.743 |
Rmeas | 0.071 | 0.038 | 0.796 |
Rpim | 0.025 | 0.014 | 0.283 |
Total number of observations | 754711 | ||
Number of reflections | 92477 | ||
<I/σ(I)> | 10.8 | 2.84 | |
Completeness [%] | 100.0 | 99.5 | 100 |
Redundancy | 8.2 | 7.7 | 7.8 |
CC(1/2) | 0.995 | 0.839 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 289 | 1.03 M sodium/phosphate buffer, 0.15 M malate, 3% PEG-300 |