4WSH
Crystal structure of Probable Uroporphyrinogen decarboxylase (UPD) (URO-D) from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-17 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.760, 73.880, 141.880 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.489 - 1.950 |
R-factor | 0.1605 |
Rwork | 0.158 |
R-free | 0.20130 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.025 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.000 | |
High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
Rmerge | 0.045 | 0.019 | 0.557 |
Rmeas | 0.051 | 0.022 | 0.627 |
Total number of observations | 263809 | ||
Number of reflections | 55710 | 679 | 4070 |
<I/σ(I)> | 20.32 | 56.78 | 2.65 |
Completeness [%] | 99.6 | 92 | 99.9 |
Redundancy | 4.7 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 290 | Microlytics , MCSG1 F10: 2M Ammonium sulphate, 100mM Tris/HCl pH 8.5; PsaeA.01152.a.B1.PS2161 at 32mg/ml; cryo: 25% in two steps; tray 257913f10, puck dxo7-1 |