4WFR
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation T232A, complexed with 2'-AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-2 |
Synchrotron site | MAX II |
Beamline | I911-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-02-02 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.04088 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.770, 47.094, 53.951 |
Unit cell angles | 90.00, 94.36, 90.00 |
Refinement procedure
Resolution | 34.214 - 2.000 |
R-factor | 0.2186 |
Rwork | 0.216 |
R-free | 0.26630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xmi |
RMSD bond length | 0.003 |
RMSD bond angle | 0.823 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.050 | |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.113 | 0.024 | 0.531 |
Rmeas | 0.135 | 0.029 | 0.636 |
Total number of observations | 45554 | ||
Number of reflections | 13864 | 148 | 1008 |
<I/σ(I)> | 9.62 | 38.72 | 2.31 |
Completeness [%] | 97.0 | 83.6 | 96.1 |
Redundancy | 3.3 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | Na-acetate, PEG 4000/6000 |