4W9D
pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methyloxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 3)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-04 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9763 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 93.901, 93.901, 365.869 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 93.900 - 2.200 |
R-factor | 0.1988 |
Rwork | 0.197 |
R-free | 0.23610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vcb |
RMSD bond length | 0.009 |
RMSD bond angle | 1.354 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 93.901 | 49.172 | 2.320 |
High resolution limit [Å] | 0.993 | 6.960 | 2.200 |
Rmerge | 0.051 | 0.818 | |
Rmeas | 0.112 | ||
Rpim | 0.032 | 0.017 | 0.260 |
Total number of observations | 1023519 | 33981 | 140759 |
Number of reflections | 84490 | ||
<I/σ(I)> | 12.7 | 27.7 | 2.9 |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 12.1 | 11.2 | 11.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.3 | 291 | PEG 3350, MgOAc, Sodium cacodylate, DTT |