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4W50

Structure of the EphA4 LBD in complex with peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E SUPERBRIGHT
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2012-03-26
DetectorRIGAKU RAXIS HTC
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths36.270, 127.690, 84.569
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.950 - 2.420
R-factor0.1735
Rwork0.171
R-free0.23250
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2wo1
RMSD bond length0.011
RMSD bond angle1.468
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.2.1)
Phasing softwarePHASER (2.5.4)
Refinement softwareREFMAC (5.8.0071)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.95050.9502.520
High resolution limit [Å]2.4208.7202.420
Rmerge0.0830.0660.246
Rpim0.0340.0270.104
Total number of observations179142462718172
Number of reflections27280
<I/σ(I)>14.423.84.9
Completeness [%]93.499.690.1
Redundancy6.67.16.3
CC(1/2)0.9950.9890.971
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52980.2M MgCl2, 0.1M Tris pH8.5, 25% PEG3350, 4% 1,3-butanediol

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PDB entries from 2026-01-21

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