4TQT
Crystal structure of Dihydropyrimidinase from Brucella suis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-01-29 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97872 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 156.690, 88.830, 221.240 |
Unit cell angles | 90.00, 91.17, 90.00 |
Refinement procedure
Resolution | 44.239 - 2.150 |
R-factor | 0.1372 |
Rwork | 0.135 |
R-free | 0.18180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dc8 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.041 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: dev_1702)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.210 | |
High resolution limit [Å] | 2.150 | 9.620 | 2.150 |
Rmerge | 0.065 | 0.020 | 0.541 |
Rmeas | 0.073 | 0.023 | 0.610 |
Total number of observations | 767858 | ||
Number of reflections | 165022 | 1914 | 12172 |
<I/σ(I)> | 16.38 | 45.06 | 2.99 |
Completeness [%] | 99.9 | 97.3 | 100 |
Redundancy | 4.65 | 4.68 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Microlytics MCSG 1 screen, B6: 20% PEG 8000, 100mM MES pH 6.5, 200mM CaOAc2; cryo: 25% EG; BrsuA.01123.b.B1.PS01876 at 19.16mg/ml, tray 247701b6, puck dbd6-4 |