4RQF
human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-03-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.99 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 160.377, 108.894, 89.491 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.625 - 3.503 |
R-factor | 0.256 |
Rwork | 0.253 |
R-free | 0.31400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4l87 3a3a |
RMSD bond length | 0.010 |
RMSD bond angle | 1.238 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.8.2_1309)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.680 |
High resolution limit [Å] | 3.503 | 3.500 |
Rmerge | 0.150 | 0.956 |
Number of reflections | 19748 | |
<I/σ(I)> | 12.4 | |
Completeness [%] | 98.7 | 100 |
Redundancy | 5.6 | 6.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7 | 298 | 18%(m/v) PEG3350, 0.1M NaCl, 0.1M Tris-HCl (pH8.0), 0.1M Sodium malonate pH7.0., VAPOR DIFFUSION, temperature 298K |