4R2G
Crystal Structure of PGT124 Fab bound to HIV-1 JRCSF gp120 core and to CD4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-06-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 164.406, 165.438, 229.712 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.647 - 3.283 |
R-factor | 0.2098 |
Rwork | 0.207 |
R-free | 0.26250 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.373 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.8.1_1168)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.647 | 3.400 |
High resolution limit [Å] | 3.283 | 3.283 |
Rmerge | 0.870 | |
Number of reflections | 94587 | |
<I/σ(I)> | 15.7 | 2.2 |
Completeness [%] | 98.3 | 95.9 |
Redundancy | 6.7 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 2.4M ammonium sulphate, 0.1M Tris, 13% glycerol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |