4Q0D
Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP, methotrexate and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-L-glutamic acid.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 77 |
Detector technology | CCD |
Collection date | 2014-03-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.075 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 213.611, 115.031, 217.643 |
Unit cell angles | 90.00, 93.92, 90.00 |
Refinement procedure
Resolution | 48.941 - 3.449 |
R-factor | 0.2181 |
Rwork | 0.217 |
R-free | 0.24200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ky8 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.676 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.510 |
High resolution limit [Å] | 3.450 | 9.350 | 3.450 |
Rmerge | 0.135 | 0.065 | 0.465 |
Number of reflections | 62866 | ||
<I/σ(I)> | 6.9 | ||
Completeness [%] | 91.0 | 99.2 | 85.6 |
Redundancy | 3.3 | 3.6 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 12% (w/v) PEG 6000, 60 mM ammonium sulfate, 200 mM lithium sulfate, and 100 mM Tris pH 8.0. ChTS-DHFR enzyme (approximately 7 mg/ml) with 1 mM NADPH, 1 mM FdUMP, 1 mM methotrexate and 0.5 mM inhibitor, VAPOR DIFFUSION, HANGING DROP, temperature 298K |