Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4PLT

Crystal structure of ancestral apicomplexan malate dehydrogenase with oxamate.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 12.3.1
Synchrotron siteALS
Beamline12.3.1
Temperature [K]90
Detector technologyCCD
Collection date2012-09-12
DetectorADSC QUANTUM 315r
Wavelength(s)1.115866
Spacegroup nameP 1 21 1
Unit cell lengths59.527, 136.311, 90.238
Unit cell angles90.00, 108.78, 90.00
Refinement procedure
Resolution43.432 - 1.600
R-factor0.1897
Rwork0.189
R-free0.22100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2hjr
RMSD bond length0.010
RMSD bond angle1.273
Data reduction softwareXDS
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.700
High resolution limit [Å]1.6001.600
Rmerge0.0802.360
Number of reflections350147
<I/σ(I)>6.660.41
Completeness [%]98.597.9
Redundancy2.52.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529320mg/mL protein with 2mM NADH/L-oxamate; well solution: 20% (w/v) PEG-1500, 0.1M HEPES, pH7.5

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon