4OGI
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor BI-2536
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-02-04 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.52 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 42.243, 59.640, 115.345 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.620 - 1.730 |
R-factor | 0.1775 |
Rwork | 0.176 |
R-free | 0.21390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oss |
RMSD bond length | 0.015 |
RMSD bond angle | 1.645 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER (2.1.4) |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.620 | 19.620 | 1.820 |
High resolution limit [Å] | 1.730 | 5.470 | 1.730 |
Rmerge | 0.094 | 0.031 | 0.772 |
Total number of observations | 4704 | 20168 | |
Number of reflections | 31157 | ||
<I/σ(I)> | 11.9 | 18.8 | 0.6 |
Completeness [%] | 99.7 | 97.4 | 99.5 |
Redundancy | 4.6 | 4.4 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277 | 0.2 M potassium citrate, 0.1 M Bis-Tris propane, pH 8.5, 20.0% PEG3350, 10% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 277K |