4OE4
Crystal Structure of Yeast ALDH4A1 Complexed with NAD+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-07-01 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | P 63 |
Unit cell lengths | 108.037, 108.037, 181.027 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.741 - 2.168 |
R-factor | 0.1745 |
Rwork | 0.173 |
R-free | 0.21220 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | same structure without NAD |
RMSD bond length | 0.008 |
RMSD bond angle | 1.087 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8_1069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 93.563 | 93.563 | 2.290 |
High resolution limit [Å] | 2.168 | 6.860 | 2.170 |
Rmerge | 0.021 | 0.583 | |
Total number of observations | 8730 | 39868 | |
Number of reflections | 63148 | ||
<I/σ(I)> | 16.5 | 26.9 | 1.3 |
Completeness [%] | 99.8 | 99.4 | 98.9 |
Redundancy | 4.4 | 4.3 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 8 - 14 % (w/v) polyethylene glycol (PEG) 3350, 0.1 M (NH4)2SO4, and 0.1 M Bis-Tris at pH 5.5 - 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |