Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4NPK

Extended-Synaptotagmin 2, C2A- and C2B-domains, calcium bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2012-10-18
DetectorADSC QUANTUM 315r
Wavelength(s)0.97912
Spacegroup nameC 1 2 1
Unit cell lengths95.840, 53.194, 85.276
Unit cell angles90.00, 99.95, 90.00
Refinement procedure
Resolution28.986 - 2.552
R-factor0.2249
Rwork0.222
R-free0.28580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4npj
RMSD bond length0.009
RMSD bond angle1.205
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.8.2_1309)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.590
High resolution limit [Å]2.5502.550
Rmerge0.0580.276
Number of reflections12318
<I/σ(I)>33.42.45
Completeness [%]88.738
Redundancy3.62.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82936% PEG 8000, 0.1 M Hepes pH 8.0, 0.125 M NaCl, 2.5% glycerol, 0.02 M CaCl2, 0.5 mM TCEP, vapor diffusion, hanging drop, temperature 293K

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon