4NGB
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 12-mer siRNA having UU-3' ends (2.25 Angstrom resolution)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-10-11 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.08090 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 109.455, 84.680, 51.634 |
Unit cell angles | 90.00, 113.30, 90.00 |
Refinement procedure
Resolution | 31.995 - 2.250 |
R-factor | 0.1844 |
Rwork | 0.182 |
R-free | 0.21970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ngd |
RMSD bond length | 0.009 |
RMSD bond angle | 1.131 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.330 |
High resolution limit [Å] | 2.250 | 4.850 | 2.250 |
Rmerge | 0.099 | 0.060 | 0.404 |
Number of reflections | 20573 | ||
<I/σ(I)> | 12.3 | ||
Completeness [%] | 99.8 | 97.9 | 100 |
Redundancy | 6.9 | 6.7 | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.3 | 293 | 0.8 M sodium/potassium tartrate, 0.1 M sodium citrate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K |