4NCF
Crystal structure of eukaryotic translation initiation factor eIF5B (399-852) from Saccharomyces cerevisiae in complex with GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-04-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.826580 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.560, 119.460, 120.730 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.664 - 3.015 |
R-factor | 0.254 |
Rwork | 0.253 |
R-free | 0.28080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4n3s |
RMSD bond length | 0.003 |
RMSD bond angle | 0.810 |
Data scaling software | XSCALE |
Phasing software | PHASER (2.3.0) |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.664 | 3.120 | |
High resolution limit [Å] | 3.020 | 50.000 | 3.020 |
Rmerge | 0.053 | 0.606 | |
Number of reflections | 21521 | ||
<I/σ(I)> | 23.32 | 3.52 | |
Completeness [%] | 99.2 | 99.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 283 | 8 % PEG 8000 0.37 M Li2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 283K |