4N47
Structure of Thermus thermophilus Argonaute bound to guide DNA and 12-mer target DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-11-15 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.886, 110.548, 124.039 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.329 - 2.823 |
R-factor | 0.1957 |
Rwork | 0.192 |
R-free | 0.26390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f73 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.010 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.800 | 7.590 | 2.800 |
Rmerge | 0.096 | 0.052 | 0.612 |
Number of reflections | 19791 | ||
<I/σ(I)> | 12.9 | ||
Completeness [%] | 99.2 | 91.2 | 99.8 |
Redundancy | 5.9 | 5.7 | 6.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 306 | 0.2 M magnesium chloride, 0.1 M Tris-HCl, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 306K |