4KN5
Crystal structure of a putative methylthioadenosine nucleosidase from Weissella paramesenteroides ATCC 33313 (Target NYSGRC-029342 )
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-03-29 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.979310 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 89.252, 89.252, 127.545 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.120 - 1.700 |
R-factor | 0.1808 |
Rwork | 0.179 |
R-free | 0.21140 |
Structure solution method | SAD |
RMSD bond length | 0.012 |
RMSD bond angle | 1.502 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | SHELX (C) |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.380 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.113 | 1.986 |
Number of reflections | 57368 | |
<I/σ(I)> | 27.8 | 2.3 |
Completeness [%] | 100.0 | 99.8 |
Redundancy | 29.2 | 27.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Protein (20mM HEPES pH7.5, 150mM NaCl, 5% glycerol, and 5mM DTT); Reservoir (MCSG3 #47: 0.1 M HEPES:NaOH pH 7.5, 0.8 M NaH2PO4, 0.8 M KH2PO4 ); Cryoprotection (33% Ethylene glycol), VAPOR DIFFUSION, SITTING DROP, temperature 298K |