Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4K6M

Crystal Structure of the full-length Japanese encephalitis virus NS5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U
Synchrotron siteSSRF
BeamlineBL17U
Temperature [K]100
Detector technologyCCD
Collection date2012-10-29
DetectorADSC QUANTUM 4
Wavelength(s)0.979305
Spacegroup nameH 3
Unit cell lengths272.293, 272.293, 177.248
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.219 - 2.600
R-factor0.198
Rwork0.196
R-free0.22800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2px2 2j7u
RMSD bond length0.008
RMSD bond angle1.164
Data reduction softwared*TREK
Data scaling softwared*TREK
Phasing softwarePHENIX
Refinement softwarePHENIX ((phenix.refine: 1.8.1_1168))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.2002.690
High resolution limit [Å]2.6002.600
Number of reflections148758
Completeness [%]98.797
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.62890.085M trisodium citrate pH 5.6, 0.17M potassium/sodium tartrate, 1.7M ammonium sulfate, 15%(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 289K

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon