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4JWY

GluN2D ligand-binding core in complex with propyl-NHP5G

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X25
Synchrotron siteNSLS
BeamlineX25
Temperature [K]100
Wavelength(s)1.10
Spacegroup nameC 2 2 21
Unit cell lengths59.996, 113.899, 95.695
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.456 - 2.000
R-factor0.1929
Rwork0.191
R-free0.23320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3oen
RMSD bond length0.008
RMSD bond angle1.172
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.8.1_1168))
Data quality characteristics
 Overall
Low resolution limit [Å]30.000
High resolution limit [Å]2.000
Number of reflections22209
Completeness [%]98.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8291100 mM CAPS, 3.5-4.5 M sodium formate, 8-12% 1,4-butanediol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K

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PDB entries from 2024-07-03

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