4HDU
Crystal structure of S. pombe ATL1 in complex with damaged DNA containing 2-aminopurine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-05-21 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.97945 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 59.978, 59.978, 235.488 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.890 - 2.848 |
R-factor | 0.2191 |
Rwork | 0.213 |
R-free | 0.26690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3gva |
RMSD bond length | 0.006 |
RMSD bond angle | 0.780 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.6.1_357)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.950 |
High resolution limit [Å] | 2.848 | 2.848 |
Rmerge | 0.048 | 0.369 |
Number of reflections | 6482 | |
<I/σ(I)> | 83.6 | 12.2 |
Completeness [%] | 99.8 | 100 |
Redundancy | 19.9 | 20.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.4 | 288 | 20% mPEG2000, 0.5 M sodium formate, 200 mM imidazole-malate, 30% xylose, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 288K |