4GND
Crystal Structure of NSD3 tandem PHD5-C5HCH domains
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-07-09 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.278 |
Spacegroup name | P 65 |
Unit cell lengths | 58.510, 58.510, 108.581 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.670 - 2.270 |
R-factor | 0.1751 |
Rwork | 0.172 |
R-free | 0.21900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gne |
RMSD bond length | 0.007 |
RMSD bond angle | 1.195 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.671 | 50.671 | 2.390 |
High resolution limit [Å] | 2.270 | 7.180 | 2.270 |
Rmerge | 0.054 | 0.308 | |
Rmeas | 0.055 | 0.317 | |
Rpim | 0.012 | 0.074 | |
Total number of observations | 6730 | 25287 | |
Number of reflections | 9797 | ||
<I/σ(I)> | 28 | 47.1 | 10.5 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 19 | 20.4 | 17.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 283 | 0.1M Hepes, 1.1M Sodium Malonate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K |