4GIS
crystal structure of an enolase family member from vibrio harveyi (efi-target 501692) with homology to mannonate dehydratase, with mg, glycerol and dicarboxylates bound (mixed loops, space group I4122)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-07-27 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 181.195, 181.195, 115.835 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.006 - 1.800 |
R-factor | 0.1524 |
Rwork | 0.151 |
R-free | 0.18330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ggh |
RMSD bond length | 0.007 |
RMSD bond angle | 1.118 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8_1069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 128.124 | 29.006 | 1.900 |
High resolution limit [Å] | 1.800 | 5.690 | 1.800 |
Rmerge | 0.133 | 0.035 | 0.683 |
Total number of observations | 42057 | 179753 | |
Number of reflections | 88533 | ||
<I/σ(I)> | 14.7 | 15.8 | 1.1 |
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 14.6 | 14 | 14 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | sitting drop vapor diffuction | 7 | 298 | Protein (10 mM Hepes pH 7.5, 150 mM NaCl, 10% glycerol, 1 mM DTT, 5 mM MgCl); Reservoir (35% Tascimate pH 7.0); Cryoprotection (Reservoir, + 20% glycerol and 50 mM MgCl), sitting drop vapor diffuction, temperature 298K |