4D79
Crystal structure of E. coli tRNA N6-threonylcarbamoyladenosine dehydratase, TcdA, in complex with ATP at 1.768 Angstroem resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97948, 1.99976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.690, 97.160, 83.190 |
Unit cell angles | 90.00, 111.61, 90.00 |
Refinement procedure
Resolution | 41.128 - 1.768 |
R-factor | 0.1437 |
Rwork | 0.142 |
R-free | 0.18330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jwa |
RMSD bond length | 0.018 |
RMSD bond angle | 1.120 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.230 | 1.770 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.080 | 0.580 |
Number of reflections | 89893 | |
<I/σ(I)> | 19 | 3.8 |
Completeness [%] | 96.1 | 38.8 |
Redundancy | 3.5 | 1.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 |