Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4D79

Crystal structure of E. coli tRNA N6-threonylcarbamoyladenosine dehydratase, TcdA, in complex with ATP at 1.768 Angstroem resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97948, 1.99976
Spacegroup nameP 1 21 1
Unit cell lengths65.690, 97.160, 83.190
Unit cell angles90.00, 111.61, 90.00
Refinement procedure
Resolution41.128 - 1.768
R-factor0.1437
Rwork0.142
R-free0.18330
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jwa
RMSD bond length0.018
RMSD bond angle1.120
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]77.2301.770
High resolution limit [Å]1.7701.770
Rmerge0.0800.580
Number of reflections89893
<I/σ(I)>193.8
Completeness [%]96.138.8
Redundancy3.51.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon