Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4D6Q

crystal structure of human JMJD2D in complex with 2,4-PDCA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2012-05-10
DetectorDECTRIS PIXEL
Spacegroup nameP 43 21 2
Unit cell lengths71.910, 71.910, 151.060
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution33.435 - 1.292
R-factor0.1361
Rwork0.135
R-free0.16130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)NONE
RMSD bond length0.007
RMSD bond angle1.079
Data reduction softwareXDS
Data scaling softwareAimless
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]33.4301.330
High resolution limit [Å]1.2901.290
Rmerge0.0700.680
Number of reflections99689
<I/σ(I)>15.92.8
Completeness [%]100.0100
Redundancy7.26.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1727% PEG3350 -- 0.1M HEPES PH 7.0 -- 0.25M AMMONIUM SULFATE

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon