4CET
Crystal structure of the complex of the P187S variant of human NAD(P) H:quinone oxidoreductase with dicoumarol at 2.2 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-12-12 |
Detector | DECTRIS PILATUS |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 51.050, 51.050, 169.040 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.197 - 2.200 |
R-factor | 0.178 |
Rwork | 0.175 |
R-free | 0.22390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qbg |
RMSD bond length | 0.004 |
RMSD bond angle | 0.895 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.800 | 2.260 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.120 | 0.660 |
Number of reflections | 12127 | |
<I/σ(I)> | 18.3 | 3.2 |
Completeness [%] | 99.8 | 98 |
Redundancy | 11.9 | 9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 7.5 | PROTEIN WAS CRYSTALLIZED FROM 0.005 M CO(II)CL-HEXAHYDRATE, 0.005 M NI(II)CL-HEXAHYDRATE, 0.005 M CDCL-HYDRATE, 0.005 M MGCL-HEAXHYDRATE, 0.1 M HEPES PH 7.5, 12 % PEG-3350 (W/V) |