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4BX9

Human Vps33A in complex with a fragment of human Vps16

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2012-05-10
DetectorDECTRIS PILATUS 2M
Spacegroup nameP 43 21 2
Unit cell lengths128.410, 128.410, 263.360
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution85.840 - 2.600
R-factor0.17762
Rwork0.176
R-free0.21024
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4bx8
RMSD bond length0.017
RMSD bond angle1.756
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]87.8002.720
High resolution limit [Å]2.6002.600
Rmerge0.1101.310
Number of reflections68560
<I/σ(I)>16.82.1
Completeness [%]100.0100
Redundancy15.214
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6293CRYSTALS WERE GROWN IN SITTING DROPS AT 20C. VPS33A:VPS16 COMPLEX (200 NL; A280 = 7.13, APPROX. 8.7 MG/ML) WAS MIXED 1:1 WITH RESERVOIR SOLUTION AND EQUILIBRATED AGAINST 80 UL RESERVOIRS CONTAINING 4% TACSIMATE PH 6.0, 12% PEG 3350 (HAMPTON RESEARCH). CRYSTALS WERE CRYOPROTECTED BY BRIEF IMMERSION IN RESERVOIR SOLUTION SUPPLEMENTED WITH 30% ETHYLENE GLYCOL AND CRYO-COOLED BY PLUNGING INTO LIQUID NITROGEN.

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