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4BRB

Crystal structure of the integral membrane enzyme DgkA-ref, delta 7

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2012-09-13
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 21 21
Unit cell lengths75.500, 91.570, 143.570
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.233 - 2.550
R-factor0.2196
Rwork0.217
R-free0.26140
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ze3
RMSD bond length0.010
RMSD bond angle1.055
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]71.7902.620
High resolution limit [Å]2.5502.550
Rmerge0.1201.000
Number of reflections32610
<I/σ(I)>7.92.2
Completeness [%]98.397.9
Redundancy5.55.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE5.62773-5 %(V/V) 2-METHYL-2, 4-PENTANEDIOL (MPD), 0.1 M SODIUM CHLORIDE, 0.06 M MAGNESIUM ACETATE, 0.1 M SODIUM CITRATE/HCL PH 5.6. CRYSTALLIZED USING THE IN MESO (LIPIDIC CUBIC PHASE) METHOD AT 4 DEGREES CELCIUS WITH THE 7.8 MONOACYLGLYCEROL (7.8 MAG) AS THE HOSTING LIPID.

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