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4B5X

Crystal structures of divalent metal dependent pyruvate aldolase (HpaI), mutant D42A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS
Synchrotron siteNSLS
Temperature [K]100
Spacegroup nameP 21 3
Unit cell lengths151.170, 151.170, 151.170
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.234 - 1.800
R-factor0.1677
Rwork0.165
R-free0.19280
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2v5j
RMSD bond length0.017
RMSD bond angle1.475
Phasing softwarePHENIX
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.8601.900
High resolution limit [Å]1.8001.800
Rmerge0.0200.380
Number of reflections103465
<I/σ(I)>16.81.8
Completeness [%]97.587
Redundancy17.87.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
10.5 M AMMONIUM DIHYDROGEN PHOSPHATE, 30% GLYCEROL, 2 MM COCL2 PH 5

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PDB entries from 2025-07-16

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